# Life Sciences Databases (ChatGPT Plugin)

> Query structured public life-science databases

- Type: plugin
- Publisher: OpenAI (official)
- Categories: Research, Data & Analytics
- Website: https://chatgpt.com/plugins/Plugin_054ff933a434819187c4f95db80afc7f
- Open in ChatGPT: https://chatgpt.com/plugins/Plugin_054ff933a434819187c4f95db80afc7f
- Version: 0.1.5
- Listed: 2026-10-15

## About

Helps you query and interpret structured public life-science resources across human genetics, variants, expression, functional genomics, proteins, structures, pathways, chemistry, pharmacology, clinical evidence, and public omics datasets. Use focused skills for source-specific lookups or combine a small set of orthogonal databases for evidence-backed research.

## Install

1. **Add it in ChatGPT** Open Plugins in the ChatGPT sidebar (web or desktop), search for “Life Sciences Databases” and select +. You'll be asked to sign in to any connected service on first use. Then type @ in a chat to call it.

## Skills

- **alphafold-skill**: Submit compact AlphaFold Protein Structure Database API requests for prediction, UniProt summary, sequence summary, and annotation lookups. Use when a user wants AlphaFold metadata or concise structure summaries
- **bgee-skill**: Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Use when a user wants concise Bgee summaries; save raw results only on request.
- **bindingdb-skill**: Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request.
- **BioBank Japan PheWAS**: Fetch BioBank Japan PheWAS associations
- **biostudies-arrayexpress-skill**: Submit compact BioStudies and ArrayExpress API requests for free-text search and accession-based study retrieval. Use when a user wants concise BioStudies summaries
- **cbioportal-skill**: Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries
- **cellxgene-skill**: Submit compact CELLxGENE Discover API requests for public collection and dataset metadata. Use when a user wants concise single-cell collection summaries
- **chebi-skill**: Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries
- **chembl-skill**: Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. Use when a user wants concise ChEMBL summaries
- **civic-skill**: Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries
- **clinicaltrials-skill**: Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Use when a user wants concise ClinicalTrials.gov summaries
- **clinvar-variation-skill**: Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. Use when a user wants variant-level summaries or identifier mapping
- **efo-ontology-skill**: Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Use when a user wants concise EFO resolution or ontology-expansion summaries
- **encode-skill**: Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Use when a user wants concise ENCODE summaries
- **ensembl-skill**: Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Use when a user wants concise Ensembl summaries

## Example prompts

- "Summarize genetics and expression evidence for IL6R."
- "Interpret this variant across ClinVar, gnomAD, and Ensembl:"
- "Find structure, pathway, and ligand records for EGFR."

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Source: https://chatgptplugins.directory/plugins/life-sciences-databases · Index: https://chatgptplugins.directory/llms.txt · Independent and community-run. Not affiliated with or endorsed by OpenAI. ChatGPT is a trademark of OpenAI.